Data Download
GTEx Cohort
H&E Whole Slide Images
| Item | Samples | Format | Link |
|---|---|---|---|
| H&E whole slide images | 399 | SVS | GTEx Portal |
Exported ROI Images
| Item | Samples | Format | Link |
|---|---|---|---|
| Exported ROI images | 399 | TIFF / JPEG + GeoJSON | Baidu Pan (Code: 4h58) |
| Exported ROI images | 399 | TIFF / JPEG + GeoJSON | OneDrive |
Source: Genotype-Tissue Expression (GTEx) Project — autopsy skeletal muscle from donors across a subclinical wasting spectrum.
HuashanMuscle Cohort
H&E Whole Slide Images
| Item | Samples | Format | Link |
|---|---|---|---|
| H&E whole slide images | 78 | SVS | Baidu Pan (Code: cdb6) |
| H&E whole slide images | 78 | SVS | OneDrive |
Each file holds the scan analysed in the paper, de-identified (no label or overview images, no scanner metadata) and on the same pixel grid as the ROI GeoJSON annotations. M2717, one of the 79 analysed slides, is not included because its original scan files are no longer available.
Exported ROI Images
| Item | Samples | Format | Link |
|---|---|---|---|
| Exported ROI images | 79 | TIFF / JPEG + GeoJSON | Baidu Pan (Code: pcqj) |
| Exported ROI images | 79 | TIFF / JPEG + GeoJSON | OneDrive |
Source: Huashan Hospital, Fudan University — clinical muscle biopsies including DM1, LGMD, and pathologically normal controls.
Citation
If you use these datasets, please cite:
Zhong H*, Gao M*, et al. MyoPath: A deep learning pipeline for objective morphometric assessment of skeletal muscle biopsies. Journal of Pathology Informatics. 2026;100747. doi:10.1016/j.jpi.2026.100747